HsaEX1022030 @ hg38
Exon Skipping
Gene
ENSG00000198670 | LPA
Description
lipoprotein(a) [Source:HGNC Symbol;Acc:HGNC:6667]
Coordinates
chr6:160545440-160548659:-
Coord C1 exon
chr6:160548478-160548659
Coord A exon
chr6:160547789-160547937
Coord C2 exon
chr6:160545440-160545533
Length
149 bp
Sequences
Splice sites
3' ss Seq
ATTTTTATTTTTTTCTACAGACT
3' ss Score
9.86
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
TGGCCTGACAATGAACTACTGCAGGAATCCAGATGCCGATACAGGCCCTTGGTGTTTTACCATGGACCCCAGCATCAGGTGGGAGTACTGCAACCTGACGCGATGCTCAGACACAGAAGGGACTGTGGTCGCTCCTCCGACTGTCATCCAGGTTCCAAGCCTAGGGCCTCCTTCTGAACAAG
Seq A exon
ACTGTATGTTTGGGAATGGGAAAGGATACCGGGGCAAGAAGGCAACCACTGTTACTGGGACGCCATGCCAGGAATGGGCTGCCCAGGAGCCCCATAGACACAGCACGTTCATTCCAGGGACAAATAAATGGGCAGGTCTGGAAAAAAAT
Seq C2 exon
TACTGCCGTAACCCTGATGGTGACATCAATGGTCCCTGGTGCTACACAATGAATCCAAGAAAACTTTTTGACTACTGTGATATCCCTCTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198670-'40-40,'40-38,41-40
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(44.9=56.5)
A:
PF0005113=Kringle=PU(60.0=96.0)
C2:
PF0005113=Kringle=PD(37.5=93.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTGACAATGAACTACTGC
R:
TCTTGGATTCATTGTGTAGCACCA
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains