HsaEX1029304 @ hg38
Exon Skipping
Gene
ENSG00000120952 | PRAMEF2
Description
PRAME family member 2 [Source:HGNC Symbol;Acc:HGNC:28841]
Coordinates
chr1:12858985-12860271:+
Coord C1 exon
chr1:12858985-12859296
Coord A exon
chr1:12859693-12859952
Coord C2 exon
chr1:12860128-12860271
Length
260 bp
Sequences
Splice sites
3' ss Seq
CTCCCTTACTTTACCCACAGGAG
3' ss Score
10.8
5' ss Seq
GTAGTAAGC
5' ss Score
4.16
Exon sequences
Seq C1 exon
AGATTTTTCTTGCAGATCCATCAGGATGAGCATCCAGGCCCCACCGAGACTACTGGAGCTGGCGGGGCAGAGCCTGCTGAGAGACCAGGCCTTGTCCATCTCTGCCATGGAGGAGCTGCCCAGGGTGCTCTATCTCCCACTCTTCAGGGAGGCCTTCAGCAGGAGACACTTCCAGACTCTGACGGTGATGGTGCAGGCCTGGCCTTTCACCTGCCTCCCTCTGGTATCGCTGATGAAGACGCTTCATCTGGAGCCATTGAAAGCATTGCTGGAAGGGCTTCATATGCTGCTTACACAGAAGGATCGCCCCAG
Seq A exon
GAGGTGGAAACTTCAAGTGCTGGATTTGCGGGATGTTGATGAGAATTTCTGGGCCAGATGGCCTGGAGCCTGGGCCCTGTCCTGCTTCCCAGAGGCCATGAGTAAGAGGCAGACAGCAGAGGACTGTCCAAGGACGGGAGAGCACCAGCCCTTAAAGGTGTTCATAGACATCTGCCTCAAGGAAATACCCCAGGATGAATGCCTGAGATACCTCTTCCAGTGGGTTTACCAAAGGAGAGGTTTAGTACACCTGTGCTGTA
Seq C2 exon
GTGCCATCATTACACGTCAGATAATGAACTCGAGGGATGGTTAGTCACCAGATTCACCTCTGTGTTCCTCAGGCTGGAACACCTCCAGTTGCTTAAAATAAAATTGATCACCTTCTTCAGTGGGCACCTGGAACAGCTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120952_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.005 C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCTCTGCCATGGAGGAG
R:
GAGGTGTTCCAGCCTGAGGAA
Band lengths:
303-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains