HsaEX1040130 @ hg38
Exon Skipping
Gene
ENSG00000274933 | TBC1D3I
Description
TBC1 domain family member 3I [Source:HGNC Symbol;Acc:HGNC:32709]
Coordinates
chr17:36255485-36257115:-
Coord C1 exon
chr17:36257021-36257115
Coord A exon
chr17:36256008-36256107
Coord C2 exon
chr17:36255485-36255637
Length
100 bp
Sequences
Splice sites
3' ss Seq
CACACCTGCTGTCCCCACAGATC
3' ss Score
11.83
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GATTTCACAGCCCAAATGGCGGGACCGTCCAGGGGCTCCAAGACCAACAGGAGCATGTGGTAGCCACGTCACAACCCAAGACCATGGGGCATCAG
Seq A exon
ATCTCTCTCGGGCTCACCCTGCGCCTGTGGGACGTGTATCTGGTAGAAGGCGAACAGGCGTTGATGCCGATAACAAGAATCGCCTTTAAGGTTCAGCAGA
Seq C2 exon
AGCGCCTCACGAAGACGTCCAGGTGTGGCCCGTGGGCACGTTTTTGCAACCGGTTCGTTGATACCTGGGCCAGGGATGAGGACACTGTGCTCAAGCATCTTAGGGCCTCTATGAAGAAACTAACAAGAAAGCAGGGGGACCTGCCACCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000274933_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.792 A=0.000 C2=0.238
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(19.6=100)
A:
PF0056613=RabGAP-TBC=FE(15.7=100)
C2:
PF0056613=RabGAP-TBC=PD(3.8=15.8)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAATGGCGGGACCGTC
R:
AGGTCCCCCTGCTTTCTTGTT
Band lengths:
226-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains