GgaEX1001669 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NDV6]
Coordinates
chr5:15412534-15414605:-
Coord C1 exon
chr5:15414540-15414605
Coord A exon
chr5:15413349-15413448
Coord C2 exon
chr5:15412534-15412686
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCTGTTGGGAGCAGACA
3' ss Score
3.96
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GACAAGGAGCAGATGACGACAGGGATTTACACCACCAAGTGGTTCCTGCAGTGCTTCATCGACCGG
Seq A exon
ACACCTTTCACCCTCACCTTGCGGCTGTGGGACATCTACATCCTGGAGGGAGAGCGGGTCCTGACAGCCATGGCTTACACCATTCTCAAGCTGCACAAAA
Seq C2 exon
AGCGCCTGCTGAAGATGACGCTGGAAGACCTGCGGGAATTTCTGCAGGAGAAAATCGCCGCGTCGCTGCAGTACGAGGATGATGCTGTCATAGACCAGCTGCAGGTGTCCATGAGCGAGCTGCGCAAGATGAAGTTTGACCTCCCCCCGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006897-'31-34,'31-33,32-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.212
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.0=100)
A:
PF0056613=RabGAP-TBC=FE(15.7=100)
C2:
PF0056613=RabGAP-TBC=PD(1.4=5.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAGCAGATGACGACAGG
R:
GGGGGAGGTCAAACTTCATCT
Band lengths:
211-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]