DreEX0068333 @ danRer10
Exon Skipping
Gene
ENSDARG00000011088 | si:ch211-288d18.1
Description
si:ch211-288d18.1 [Source:ZFIN;Acc:ZDB-GENE-060503-323]
Coordinates
chr7:48763713-48776977:+
Coord C1 exon
chr7:48763713-48763778
Coord A exon
chr7:48773928-48774027
Coord C2 exon
chr7:48776825-48776977
Length
100 bp
Sequences
Splice sites
3' ss Seq
AAACATGTCATCTTTTCCAGACC
3' ss Score
7.75
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GATAAGGAGCAGATGTCCAGTGGTATTTACAGCACTAAATGGTTCCTCCAATGTTTTATCAACAGG
Seq A exon
ACCCCATTCACTTTGACCTTACGTCTGTGGGATATCTTTATCCTGGAAGGCGAGAAAGTTCTGACAGCCATGGCTTACACTATCCTTCAGCTCCACAAAA
Seq C2 exon
AACGCTTGCTCAAGATGTCTCTGGAGGAGCTGAGAGAGTTCCTGCAGGAGAAGATAGGAGAGTCCATCTACCTCAATGATGACCTGGTCATAGAGCAGCTTAAAGTGTCCATGTCTGAACTTCGCAAAATGAAGCTTGACGTCCCTCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011088-'11-13,'11-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.096
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.0=100)
A:
PF0056613=RabGAP-TBC=FE(15.7=100)
C2:
PF0056613=RabGAP-TBC=PD(1.4=5.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGGAGCAGATGTCCAGTGGT
R:
CTGGTGGAGGGACGTCAAGC
Band lengths:
218-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]