GgaEX1001669 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr5:17181352-17183422:-
Coord C1 exon
chr5:17183357-17183422
Coord A exon
chr5:17182167-17182266
Coord C2 exon
chr5:17181352-17181504
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCTGTTGGGAGCAGACA
3' ss Score
3.96
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GACAAGGAGCAGATGACGACAGGGATTTACACCACCAAGTGGTTCCTGCAGTGCTTCATCGACCGG
Seq A exon
ACACCTTTCACCCTCACCTTGCGGCTGTGGGACATCTACATCCTGGAGGGAGAGCGGGTCCTGACAGCCATGGCTTACACCATTCTCAAGCTGCACAAAA
Seq C2 exon
AGCGCCTGCTGAAGATGACGCTGGAAGACCTGCGGGAATTTCTGCAGGAGAAAATCGCCGCGTCGCTGCAGTACGAGGATGATGCTGTCATAGACCAGCTGCAGGTGTCCATGAGCGAGCTGCGCAAGATGAAGTTTGACCTCCCCCCGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006897-'21-22,'21-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.212
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.1=100)
A:
PF0056613=RabGAP-TBC=FE(15.9=100)
C2:
PF0056613=RabGAP-TBC=PD(1.4=5.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAGCAGATGACGACAGG
R:
GGGGGAGGTCAAACTTCATCT
Band lengths:
211-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]