HsaEX6005921 @ hg19
Exon Skipping
Gene
ENSG00000156304 | SFRS15
Description
SR-related CTD-associated factor 4 [Source:HGNC Symbol;Acc:19304]
Coordinates
chr21:33077736-33081736:-
Coord C1 exon
chr21:33081722-33081736
Coord A exon
chr21:33078587-33078670
Coord C2 exon
chr21:33077736-33077780
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTTGTCTTTTAAGCTC
3' ss Score
9.42
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GCTTTTAATGACCAG
Seq A exon
CTCTTTTCGCTTATGGATATGAAACCTCCCATCTCTAGAGCCAAGATGATTCTCATCACTAAAGCTGCTATTAAAGCTATTAAG
Seq C2 exon
CTTTATAAGCATGTAGTTCAAATAGTAGAAAAGTTCATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156304-'2-3,'2-2,3-3=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)