GgaEX6004204 @ galGal4
Exon Skipping
Gene
ENSGALG00000015850 | SCAF4
Description
splicing factor, arginine/serine-rich 15 [Source:RefSeq peptide;Acc:NP_001012840]
Coordinates
chr1:104020121-104032501:-
Coord C1 exon
chr1:104032478-104032501
Coord A exon
chr1:104020782-104020865
Coord C2 exon
chr1:104020121-104020165
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTGTTTCTGTTCAGCTC
3' ss Score
9.71
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GCCGTGAACGCCTTCAACCAGGAG
Seq A exon
CTCTTTTCGCTGATGGAGATGAAACCTCCTATTTCCCGAGCAAAAATGATCCTCATCACAAAAGCCGCCATTAAAGCTATCAAG
Seq C2 exon
CTCTACAAACACGTTGTCCAGATTGTAGAGAAGTTTATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015850-'1-5,'1-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGAACGCCTTCAACCAG
R:
TGATAAACTTCTCTACAATCTGGACA
Band lengths:
63-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]