GgaEX6004204 @ galGal3
Exon Skipping
Gene
ENSGALG00000015850 | SFRS15
Description
NA
Coordinates
chr1:108152212-108153542:-
Coord C1 exon
chr1:108153513-108153542
Coord A exon
chr1:108152873-108152956
Coord C2 exon
chr1:108152212-108152256
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTGTTTCTGTTCAGCTC
3' ss Score
9.71
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GCTGCTGCAATTAACTTGAATAATTATATG
Seq A exon
CTCTTTTCGCTGATGGAGATGAAACCTCCTATTTCCCGAGCAAAAATGATCCTCATCACAAAAGCCGCCATTAAAGCTATCAAG
Seq C2 exon
CTCTACAAACACGTTGTCCAGATTGTAGAGAAGTTTATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015850-'2-5,'2-4,3-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGCAATTAACTTGAATAATT
R:
CTTCTCTACAATCTGGACAACGTGT
Band lengths:
63-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]