HsaEX6005921 @ hg38
Exon Skipping
Gene
ENSG00000156304 | SCAF4
Description
SR-related CTD associated factor 4 [Source:HGNC Symbol;Acc:HGNC:19304]
Coordinates
chr21:31705423-31732075:-
Coord C1 exon
chr21:31731663-31732075
Coord A exon
chr21:31706274-31706357
Coord C2 exon
chr21:31705423-31705467
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTTGTCTTTTAAGCTC
3' ss Score
9.42
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CGCTGGAGAGAGGGAGAGAGAGGCCCGCCCGCTCGCCGGCCGGGCCAGTGTGAGCCAGTGCGTGAGGGCGCGGGGGGCCGTGTCAGCGAGACGCAGAGCGCAGCCGCCACCACCAAACGGACATGTTGAAGACCAGCGCTGCCGCCGCCTCCTTTTCCTCATCCTGCGAACGGGACTGAGAGGGGGCCCGCCACCTCTCCGCCTCTGCCTCGGCCGCCCGCCTCGCCGCTTCGGGCGCAGCCTCTTCCTGCCCGGGCCTCGGACTCCGCCGCTCGTCGCCTCCCCCCGGCCACCAGGCCCGGCTGGTTTCCCAGCCCCGCTCCGCCGCGGCGCGAGGTCTATGTGACCGGCGGGCCCGGAGCAGCCGCCGCCGCAGCGCGAACATGGACGCCGTCAACGCCTTCAACCAGGAG
Seq A exon
CTCTTTTCGCTTATGGATATGAAACCTCCCATCTCTAGAGCCAAGATGATTCTCATCACTAAAGCTGCTATTAAAGCTATTAAG
Seq C2 exon
CTTTATAAGCATGTAGTTCAAATAGTAGAAAAGTTCATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156304-'0-3,'0-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains