MmuEX6063294 @ mm10
Exon Skipping
Gene
ENSMUSG00000022983 | Scaf4
Description
SR-related CTD-associated factor 4 [Source:MGI Symbol;Acc:MGI:2146350]
Coordinates
chr16:90262174-90284308:-
Coord C1 exon
chr16:90284003-90284308
Coord A exon
chr16:90263093-90263176
Coord C2 exon
chr16:90262174-90262218
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCTTGTTTTTTAAGCTC
3' ss Score
9.04
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATGTTGGAGCCCCGCGCTGCCGCCGCCTCCCATCCCTCCTCCGGCGCACGGGACTGAGCAGGGGCCCGCCGCCTCTGCCTGCGCTCGACCGGCCCAGCCTCGCCGCCTCGGCCGCAGCCCCTTCCTGCTCGGCCTCCGCCGCTCGTCGCCTCCCGTCCTCCTCCCCCTCCACGCCCAAGGGCCCTGCCGGCACCCGGCCCTACTCAGCCGCCGCTCCAGGTCTAGGTGACCGGCGGGCCCGGAGCAGCCGCAGCCGCCGCCGCAACGCGCGCGAACATGGACGCCGTCAACGCCTTCAACCAGGAG
Seq A exon
CTCTTCTCACTTATGGATATGAAGCCTCCCATCTCTAGAGCCAAGATGATTCTCATTACTAAAGCTGCTATCAAAGCTATTAAG
Seq C2 exon
CTTTATAAGCACGTTGTTCAAATAGTAGAAAAGTTCATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022983-'1-2,'1-1,3-2=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCCTCCCCCTCCAC
R:
TTCTACTATTTGAACAACGTGCTT
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types