HsaEX6017579 @ hg19
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:18661]
Coordinates
chr2:196738292-196741423:-
Coord C1 exon
chr2:196741268-196741423
Coord A exon
chr2:196740399-196740567
Coord C2 exon
chr2:196738292-196738418
Length
169 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTTCTCATTCTCAGGTT
3' ss Score
10.88
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
AATTTTCTTTTAAATCAACTAAATAAGGAAATCTACAAACCTCTGCTAATTAACTTCTCAGCACAAACTACAGCAGCTCAAACTCAGAATATTGTCATGTCAAAATTGGACAAGAGAAGAAAGGGAGTTTTTGGTCCTCCTTTGGGCAAGAGAATG
Seq A exon
GTTGTCTTTGTAGATGATGTCAATATGCCTGCTCGGGAGGTATATGGGGCTCAACCTCCCATTGAGTTACTTAGACAGTGGTTAGACCACTGGAACTGGTATGATCTAAAAGATTGTTCCATGATTAAACTAGTGGACATTCAGATCATGTGTGCTATGGGACCTCCAG
Seq C2 exon
GTGGTGGTCGAAATCCAGTAACTCCTCGATACATGCGACATTTCAATATTATAACAATCAATGAGTTTAGTGATAAATCCATGTATACAATCTTCTCTAGAATCTTAACTTGGCATTTAGAAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'42-43,'42-42,43-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(18.6=100)
A:
PF127752=AAA_7=FE(20.4=100)
C2:
PF127752=AAA_7=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAATCTACAAACCTCTGCT
R:
TGCCAAGTTAAGATTCTAGAGAAGA
Band lengths:
246-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)