DreEX6036413 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25183417-25185564:-
Coord C1 exon
chr9:25185409-25185564
Coord A exon
chr9:25184924-25185092
Coord C2 exon
chr9:25183417-25183543
Length
169 bp
Sequences
Splice sites
3' ss Seq
CTTTTAATTATTTTGATCAGGTG
3' ss Score
7.05
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GACTTTTTGCTGAATCGTCTGGAGAAGGATGTGTACAGTCCTCTGTTGATCAACTTCTCAGCACAAACAACAGCAGCACAGACCCAAAACATTATTATGTCAAAACTTGATAAAAGGAGGAAAGGAGTGTTTGGCCCTCCCCTGGGAAAGAAAATG
Seq A exon
GTGGTTTTTGTGGATGATGTGAATATGCCAGCAAGAGAGACGTATGGAGCCCAGCCTCCAGTGGAGCTTCTGCGGCAGTGGCTTGACCACTGGAACTGGTATGACATGAAGGACTGCTCCATGATCAACTTAGTGGACATCCAGATCATGTGTGCTATGGGTCCGCCTG
Seq C2 exon
GTGGAGGTAGGAACCCCGTGACTCCTCGGTTTTTACGGCATTTCAACACAGTGACTATTAATGAATTTGATAACAAAACCATGTTCACCATTTTTTCAAGAATTCTGGACTGGCACTTAACCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'36-37,'36-36,37-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(18.6=100)
A:
PF127752=AAA_7=FE(20.4=100)
C2:
PF127752=AAA_7=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTGGAGAAGGATGTGTACA
R:
AGTGCCAGTCCAGAATTCTTGA
Band lengths:
258-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]