HsaEX6017579 @ hg38
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr2:195873568-195876699:-
Coord C1 exon
chr2:195876544-195876699
Coord A exon
chr2:195875675-195875843
Coord C2 exon
chr2:195873568-195873694
Length
169 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTTCTCATTCTCAGGTT
3' ss Score
10.88
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
AATTTTCTTTTAAATCAACTAAATAAGGAAATCTACAAACCTCTGCTAATTAACTTCTCAGCACAAACTACAGCAGCTCAAACTCAGAATATTGTCATGTCAAAATTGGACAAGAGAAGAAAGGGAGTTTTTGGTCCTCCTTTGGGCAAGAGAATG
Seq A exon
GTTGTCTTTGTAGATGATGTCAATATGCCTGCTCGGGAGGTATATGGGGCTCAACCTCCCATTGAGTTACTTAGACAGTGGTTAGACCACTGGAACTGGTATGATCTAAAAGATTGTTCCATGATTAAACTAGTGGACATTCAGATCATGTGTGCTATGGGACCTCCAG
Seq C2 exon
GTGGTGGTCGAAATCCAGTAACTCCTCGATACATGCGACATTTCAATATTATAACAATCAATGAGTTTAGTGATAAATCCATGTATACAATCTTCTCTAGAATCTTAACTTGGCATTTAGAAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'59-64,'59-60,61-64=AN
Average complexity
A_C3
Mappability confidence:
83%=100=71%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(18.6=100)
A:
PF127752=AAA_7=FE(20.4=100)
C2:
PF127752=AAA_7=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACTCCATGTTAAGGAGGAATGT
R:
AGTGAGCCGAGATCCCGC
Band lengths:
202-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains