GgaEX1020211 @ galGal3
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10712705-10716070:-
Coord C1 exon
chr7:10715915-10716070
Coord A exon
chr7:10714667-10714835
Coord C2 exon
chr7:10712705-10712831
Length
169 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTTTTCCTTTTTCAGGTT
3' ss Score
13.8
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
AATTTCCTTTTAAATAATTTGAATAAAGAAGTCTACAAGCCACTGCTCATTAACTTTTCAGCACAAACTACGGCAGCTCAGACTCAGAATATTATAATGTCTAAGCTGGATAAAAGGAGAAAAGGAATTTTTGGGCCTCCTTTGGGGAAAAGAATG
Seq A exon
GTTGTATTTGTAGATGATGTTAACATGCCAGCCCGAGAGGTCTATGGTGCTCAACCTCCTGTTGAGTTACTACGACAGTGGTTAGATCACTGGAATTGGTATGACCTTAAAGACTGCTCAATGATAAAACTTGTAGATATTCAGATTGTCTGTGCAATGGGACCACCGG
Seq C2 exon
GTGGTGGTCGAAACCCAGTAACACCACGATTCTTGCGACACTTCAATAAAATTACCATTAATGAGTTTGATGATGAATCCATGTACACAATATTTTCTAGAATCTTAGACTGGCATCTGACTATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'28-29,'28-28,29-29=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(18.6=100)
A:
PF127752=AAA_7=FE(20.4=100)
C2:
PF127752=AAA_7=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGTCTACAAGCCACTGC
R:
AGTCAGATGCCAGTCTAAGATTCT
Band lengths:
253-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]