BtaEX6010442 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84879731-84883213:-
Coord C1 exon
chr2:84883058-84883213
Coord A exon
chr2:84882145-84882313
Coord C2 exon
chr2:84879731-84879857
Length
169 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCTTTCATTCTCAGGTT
3' ss Score
11.87
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AATTTTCTTTTAAATCAACTCAATAAAGATATCTACAAGCCTTTGCTGATTAACTTCTCAGCACAAACTACAGCAGCTCAAACTCAAAATATTATCATGTCAAAACTGGACAAAAGAAGAAAGGGAGTTTTTGGTCCTCCTTTGGGCAAGAAAATG
Seq A exon
GTTGTCTTTGTAGATGATGTCAATATGCCTGCTCGAGAGGTGTATGGCGCCCAGCCTCCCATCGAGTTACTTAGACAATGGTTAGATCACTGGAATTGGTATGACCTAAAAGACTGTTCTATGATTAAACTAGTGGACATTCAAATTATGTGTGCTATGGGACCTCCAG
Seq C2 exon
GTGGTGGTCGAAATCCAGTAACTCCTCGATACATGCGGCATTTCAATATTATAACAATCAATGAGTTTAGTGATAAATCTATGTTTACAATATTTTCTAGAATCTTAACCTGGCATTTAAAAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'38-42,'38-41,39-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(18.6=100)
A:
PF127752=AAA_7=FE(20.4=100)
C2:
PF127752=AAA_7=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTGCTGATTAACTTCTCAGC
R:
CAGGTTTTTAAATGCCAGGTTAAGA
Band lengths:
245-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]