RnoEX0028578 @ rn6
Exon Skipping
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60212312-60213888:-
Coord C1 exon
chr9:60213788-60213888
Coord A exon
chr9:60213325-60213493
Coord C2 exon
chr9:60212312-60212438
Length
169 bp
Sequences
Splice sites
3' ss Seq
TAATCTCTTTTCTTTCTTAGATT
3' ss Score
9.33
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
CACAGATGGACTTGAACCACCAACCTACAAATATTAGCAATGAGGAGGGCTCCTTATTTCTGTAGGAACCTAAAGATAGTAAAGAAACAATCACCTCTCAG
Seq A exon
ATTGTCTTTGTAGACGACGTGAATATGCCTGCTCGAGAGGTCTATGGGGCTCAGCCACCCATTGAGTTACTTAGACAGTGGTTAGATCATTGGAATTGGTACGACCTCAAAGATTGCTCTATGATTAAACTGGTGGACATCCAGATCATGTGTGCTATGGGCCCTCCAG
Seq C2 exon
GTGGTGGCCGAAATCCAATAACTCCTCGATACATGAGACATTTCAATATTATAACCATCAATGAGTTTAGTGACAAGTCCATGTTCACAATCTTCTCCAGAATCCTGACCTGGCATTTAAGGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984-'38-40,'38-39,39-40
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF127752=AAA_7=FE(20.4=100)
C2:
PF127752=AAA_7=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGATGGACTTGAACCACCA
R:
GGTCCTTAAATGCCAGGTCAGG
Band lengths:
226-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]