HsaEX6023320 @ hg19
Exon Skipping
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:16387]
Coordinates
chr17:45892581-45893848:-
Coord C1 exon
chr17:45893754-45893848
Coord A exon
chr17:45893473-45893568
Coord C2 exon
chr17:45892581-45892718
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCCTCACCCTCTCCCTGCAGGTC
3' ss Score
14.18
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TGCACAGCTCCCTCAGCAGCGTCCTGGCCGCCCTCACCATGGAACGGGACCAACTGAGGGACATGCACCAGGGCTCAGAGTTGTCAAGAATGGGG
Seq A exon
GTCTCTGAGGCCTCCACTGGCCAGAGGCGCCTCCACTCACTGTCCACCTCCTCCGACACCACGGCGGACTCTTTCAGCTCCCTCAACCCTGAGGAG
Seq C2 exon
CAAGAAGCTCTGTACATGAAGGGGCGCGAGCTCACCCCCCAGCTATCGCAGACCAGCATCCTGTCCCTTGCTGATTCCCACACGGAGTTCTTCGATGCCTGCGAGGTTCTCCTCTCCGCCAGCTCTTCTGAGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=1.000 C2=0.435
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(31.0=100)
A:
PF0010425=Hormone_recep=FE(31.0=100)
C2:
PF0010425=Hormone_recep=PD(7.0=15.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGAGGGACATGCACCAG
R:
CATTCTCAGAAGAGCTGGCGG
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)