BtaEX6088115 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013523 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr19:39258097-39259260:+
Coord C1 exon
chr19:39258097-39258191
Coord A exon
chr19:39258388-39258483
Coord C2 exon
chr19:39259123-39259260
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCCTCACTCTCTCCCCGCAGGTC
3' ss Score
15.09
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
TGCACAGCTCGCTCAGCAGTGTCCTGGCCGCCCTCACTGCTGAACGGGACCGACTGAGGGACCTGCACCCGGGTTCGGAGCCATCCAGGCTGGGG
Seq A exon
GTCTCTGAGACTTCAGCCGGCCCGAGGCGCCTCCACTCGTTGTCCATCTCCTCCGACACCACTGCAGACTCCTTCAGCTCCCTCAATCCCGAGGAG
Seq C2 exon
CAAGAAGCTCTGTACATGAAGGGGCGAGAGCTGACCCCCCAGCTGTCCCAGAGCAGCGTCCTATCCCTTGCTGACTCCCACACAGAGTTCTTTGATGCCTGTGAGGTTCTCCTCTCTGCCAGCTCTTCTGAGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013523-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=0.844 C2=0.413
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACGGGACCGACTGAGG
R:
GAAGAGCTGGCAGAGAGGAGA
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]