RnoEX0062535 @ rn6
Exon Skipping
Gene
ENSRNOG00000009473 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:RGD Symbol;Acc:1309141]
Coordinates
chr10:84991415-84992996:+
Coord C1 exon
chr10:84991415-84991509
Coord A exon
chr10:84991689-84991784
Coord C2 exon
chr10:84992859-84992996
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCCCTCACCCTCTGCCTCAGGTT
3' ss Score
8.08
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TGCACAACTCCCTCAGCAGTGTCCTGGTTGCCCTCACCACAGAACGGGACCGACTGAGAGACCTGCACCAGGGCTCAGAGTTGTCAAGGATGGCG
Seq A exon
GTTTCTGAGGCTCCGGATGGTCAGAGACGTCTCCACTCACTCTCCATATCCTCAGACACCACAGCAGACTCCTTCAGTTCCCTGAACCCGGAGGAG
Seq C2 exon
CAAGAAGCTCTGTACAGGAAAGGCCGGGAGCTGACCCCCCAGCTGTCCCAGAGCAGCGTGCTGTCCCTCGCTGACTCCCACACCGAGTTCTTTGATGCCTGTGAGGTGCTCCTCTCTGCCAGTTCTTCTGAGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009473-'11-20,'11-18,12-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.406 A=0.812 C2=0.413
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCCCTCAGCAGTGTCCTG
R:
AAGAACTCGGTGTGGGAGTCA
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]