MmuEX6089169 @ mm9
Exon Skipping
Gene
ENSMUSG00000038534 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:MGI Symbol;Acc:MGI:1918490]
Coordinates
chr11:96917567-96919911:+
Coord C1 exon
chr11:96917567-96917661
Coord A exon
chr11:96917842-96917937
Coord C2 exon
chr11:96919774-96919911
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCCCTCGCCCTCTGCCTCAGGTT
3' ss Score
9.14
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TGCACAACTCCCTCAGCAGTGTCCTGGTTGCCCTCACCACAGAACGGGACCGACTGAGAGACCTGCACCAGGGCTCAGAGCTGTCAAGGATGGTA
Seq A exon
GTTTCTGAGGCCCCGGATGGTCAGAGACGCCTCCACTCACTCTCCATCTCCTCAGACACCACGGCAGACTCCTTCAGTTCCCTGAACCCGGAGGAG
Seq C2 exon
CAAGAAGCTCTGTACATGAAAGGCCGAGAGCTGACCCCCCAGCTGTCGCAGAGCAGTGTGCTGTCCCTCGCCGACTCCCACACCGAGTTCTTTGATGCCTGTGAGGTGCTCCTCTCTGCCAGTTCTTCCGAGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038534-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.406 A=0.740 C2=0.349
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACGGGACCGACTGAGAG
R:
AAGAACTGGCAGAGAGGAGCA
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: