HsaEX6023320 @ hg38
Exon Skipping
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr17:47815215-47816482:-
Coord C1 exon
chr17:47816388-47816482
Coord A exon
chr17:47816107-47816202
Coord C2 exon
chr17:47815215-47815352
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCCTCACCCTCTCCCTGCAGGTC
3' ss Score
14.18
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TGCACAGCTCCCTCAGCAGCGTCCTGGCCGCCCTCACCATGGAACGGGACCAACTGAGGGACATGCACCAGGGCTCAGAGTTGTCAAGAATGGGG
Seq A exon
GTCTCTGAGGCCTCCACTGGCCAGAGGCGCCTCCACTCACTGTCCACCTCCTCCGACACCACGGCGGACTCTTTCAGCTCCCTCAACCCTGAGGAG
Seq C2 exon
CAAGAAGCTCTGTACATGAAGGGGCGCGAGCTCACCCCCCAGCTATCGCAGACCAGCATCCTGTCCCTTGCTGATTCCCACACGGAGTTCTTCGATGCCTGCGAGGTTCTCCTCTCCGCCAGCTCTTCTGAGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025-'20-20,'20-17,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.539 A=0.932 C2=0.413
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGAGGGACATGCACCAG
R:
CATTCTCAGAAGAGCTGGCGG
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains