DreEX0052799 @ danRer10
Exon Skipping
Gene
ENSDARG00000012981 | osbpl7
Description
oxysterol binding protein-like 7 [Source:ZFIN;Acc:ZDB-GENE-041010-212]
Coordinates
chr12:28667015-28671847:-
Coord C1 exon
chr12:28671717-28671847
Coord A exon
chr12:28667367-28667459
Coord C2 exon
chr12:28667015-28667180
Length
93 bp
Sequences
Splice sites
3' ss Seq
GTGTATGTGTGTATCTCCAGTTA
3' ss Score
7.71
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
TTCATGCCTCTCTGCGAACTGCACATGAGGCTCTCGCTCAGGAGCGCCAGCGACTGCGGGACACCTGGTCCGGCAGAGACCTTCACCAGAACACCTCTGCCCAGCTCAACAACCTCTGCAGTCTAGCTGAG
Seq A exon
TTAGATGTTAATTCCCGTCATACCAAAATCCACAAACTCTCCATATCTTCCAACTCCTCGGACGACTCCTTCCGCACTGTGGAACAAAGGAAG
Seq C2 exon
TCTGTCTCCAGCCGCTGTTCTTCTTTCCGTGCACCATCGATTGCTGATTCGGTGGCGGAGTATTTTGACGCGTGTGATGAGCTGAAGTGTGCTAGCTCCTCTGAAATGTCTGATGAGTCTGGTCTGAGTGATGGATCCAGTAATTCAGAGCCCTATGAGGCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012981_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.613 C2=0.357
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATGCCTCTCTGCGAACTG
R:
CGATGGTGCACGGAAAGAAGA
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]