HsaEX6024058 @ hg19
Exon Skipping
Gene
ENSG00000170921 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:30212]
Coordinates
chr17:61176536-61278318:+
Coord C1 exon
chr17:61176536-61176607
Coord A exon
chr17:61271352-61271500
Coord C2 exon
chr17:61278132-61278318
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCAATGCCTTCTTGTTACAGGTG
3' ss Score
10.3
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTGGCATCTCCACAGAAAGCGACTGTGCTTTTGAGCCAGACTACGCTGTCCCGCCACTTCCAGTGAGTGAAG
Seq A exon
GTGATGCTGAACAGGAGCTTGGCCCCCCTCCATCTGTAGATGAGGCAGCAAACACACTCATGACTCGTCTGGGTTTCCTCCTTGGAGAGAAAGTCACAGAAGTTCAGCCAGGTGACCAATACAGCATGGAAGTACAGGATGAAAATCAG
Seq C2 exon
ACCTCAGCAATCACCCAGCGGATAAGTCCTTGTTCCACTCTGACTAGCAGCACTGCCTCTCCACCAGCCAGTAGCCCCTGCTCTACACTCCCACCCATCAGTACAAATGCAACTGCCAAGGACTGCAGCTATGGGGCTGTTACTAGTCCAACCTCTACCCTTGAAAGCAGAGATAGTGGCATCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170921-'4-7,'4-6,6-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.913 C2=0.849
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTCCACAGAAAGCGACT
R:
GCCACTATCTCTGCTTTCAAGGG
Band lengths:
249-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)