BtaEX6089500 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48183323-48275230:+
Coord C1 exon
chr19:48183323-48183394
Coord A exon
chr19:48269493-48269641
Coord C2 exon
chr19:48275044-48275230
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCAATGCCTTCCTGTTGCAGGTG
3' ss Score
11.3
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTGGCATCTCCACAGAAAGCGACTGTGCTTTTGAGCCAGACTACGCCGTCCCACCACTTCCCGTGAGTGAAG
Seq A exon
GTGATGCTGAACAGGAACTTGGTCCCCCTCCATCTGTAGATGAGGCAGCAAACACACTCATGACTCGTCTGGGTTTCCTCCTTGGGGAGAAAGTCACGGAAGTTCAGCCAGGTGACCAGTACAACATGGAAGTCCAGGATGAAAATCAG
Seq C2 exon
ACCTCAGCAATCACCCAGCGGATAAGTCCCTGTTCCACCTTGACTAGCAGCACTGCCTCTCCACCAGCCAGCAGCCCCTGCTCCACTCTCCCACCAGTCAGTACAAGTGCGACCGCCAAGGACGGCAGCTATGGGGCCGTCACGAGTCCAACCTCCACCCTTGAAAGCAGAGATAGTGGAATCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249-'3-6,'3-5,8-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.913 C2=0.979
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCTCCACAGAAAGCGAC
R:
CTCTGCTTTCAAGGGTGGAGG
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]