RnoEX0088536 @ rn6
Exon Skipping
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:93901201-93967327:+
Coord C1 exon
chr10:93901201-93901272
Coord A exon
chr10:93962609-93962757
Coord C2 exon
chr10:93967141-93967327
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTGCTGTCTTCTTGCTGCAGGTG
3' ss Score
11.05
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTGGCATCTCCACAGAAAGTGATTGTGCTTTTGAGCCAGACTACGCCGTTCCAGCACTTCCAGTGAGTGAAG
Seq A exon
GTGATGTTGAACAGGAACTTGGCCCACCTCCATCTGTAGATGAGGCAGCAAACACACTCATGACTCGTCTGGGTTTCCTCCTTGGAGAGAAAGTCACAGAAGTACAACCAGGTGACCAATACAGCATGGAGGTACAGGATGAAAATCAG
Seq C2 exon
ACCTCAGCAATCACCCAGCGAATAAGTCCCTGCTCCACCTTGACAAGCAGCACTGCCTCTCCACCAGCCAGCAGCCCCTGTTCTACGCTCCCACCAGTCAGTACAAATGCAACTGCCAAAGACTGTAGCTATGGGGCTGTCACTAGCCCCACCTCCACCCTAGAAAGCAGAGACAGTGGCATCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840-'11-15,'11-14,18-15
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.802 A=0.728 C2=0.898
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATTGTGCTTTTGAGCCAGA
R:
CAATGATGCCACTGTCTCTGCT
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]