MmuEX0046261 @ mm9
Exon Skipping
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105574696-105641439:+
Coord C1 exon
chr11:105574696-105574767
Coord A exon
chr11:105638120-105638268
Coord C2 exon
chr11:105641253-105641439
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTGCTGTCTTCCTGCTCCAGGTG
3' ss Score
11.33
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTGGCATCTCCACAGAAAGCGATTGTGCTTTTGAGCCAGACTATGCTGTTCCACCACTTCCAGTGAGTGAAG
Seq A exon
GTGATGTTGAACAAGAACTTGGCCCACCTCCATCTGTAGATGAGGCAGCAAACACACTCATGACTCGTCTGGGTTTCCTCCTTGGAGAGAAAGTCACAGAAGTACAACCAAGTGACCAATATAGCATGGAGGTACAGGATGAAAATCAG
Seq C2 exon
ACTTCAGCAATCACCCAGAGAATAAGTCCCTGCTCCACCTTGACTAGCAGCACTGCCTCTCCACCAGCCAGCAGCCCCTGCTCTACGCTCCCACCAGTCAGTACAAATGCAGCTGCCAAGGACTGTAGCTATGGGGCTGTCACCAGCCCCACCTCCACTCTAGAAAGCAGAGACAGTGGCATCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580-'3-8,'3-7,8-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.923 C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCTCCACAGAAAGCGAT
R:
CAATGATGCCACTGTCTCTGCT
Band lengths:
257-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: