DreEX0077227 @ danRer10
Exon Skipping
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22595281-22637179:+
Coord C1 exon
chr3:22595281-22595463
Coord A exon
chr3:22630220-22630368
Coord C2 exon
chr3:22636990-22637179
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTTATTCTCTTACAGGGG
3' ss Score
11.38
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
GCAGTGACTCCGTGGAGGGCGAGTGTGTGTTCGAGGGGGATTACGCTGTCCCTCCTCTCCCGGTGACCGAGGGCATGCAGCACATTCGGATCATGGAGGGCGTGACACGCTCTCTCCCCTCCTCTCCTCTGCTGTCCCATCAGGCCCTCAACATGCGTCTGCAACCCATCAAGAGACTGCCAG
Seq A exon
GGGATGAAGGGCAGAATTTGGGTCCTCCTCCTTCTGTAGACGAGGCTGCAAACACACTGATGACGCGACTGGGGTTCCTGCTGGGGGATAAAGTGAATGAAGGGCCTGCTGGAGCACAATACACCATGGAGGAGCAAGATGACCCTCAG
Seq C2 exon
TGCCTCTCCATGACCCAGAGGATCAGCCCCTGCTCCAGTCTGGCCAGCAGCACAGCCTCTCCACCTGCTGGAAGCCCCTGCTCCACTCTGCCTGCTGGAGCCCCTGGTAACATGAGCACCCGAGACTGTGCTTACGGCTCCATCACCAGTCCAACATCCACACTGGAGAGCCGGGACAGCGGCATTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097-'10-18,'10-17,16-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.758 A=0.740 C2=0.891
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCACATTCGGATCATGGA
R:
GACTGGTGATGGAGCCGTAAG
Band lengths:
258-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]