HsaEX6024430 @ hg19
Exon Skipping
Gene
ENSG00000154258 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:39]
Coordinates
chr17:66989157-67004013:-
Coord C1 exon
chr17:67003900-67004013
Coord A exon
chr17:66992036-66992155
Coord C2 exon
chr17:66989157-66989225
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATACTGTGCATTTGTTTTAGGTG
3' ss Score
10.28
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATCCTGTGTAGTATTGGCTATGTCTCATCTCTTGTTTTCTTGACATATGTGATTTCATTCATTTTTCGCAATGGGAGAAAAAATAGTGGCATTTGGTCATTTTTCTTCTTAATT
Seq A exon
GTGGTCATCTTCTCGATAGTTGCTACTGATCTAAATGAATATGGATTTCTAGGGCTATTTTTTGGCACCATGTTAATACCTCCCTTCACATTGATTGGCTCTCTATTCATTTTTTCTGAG
Seq C2 exon
ATTTCTCCTGATTCCATGGATTACTTAGGAGCTTCAGAATCTGAAATTGTATACCTGGCACTGCTAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154258-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.1=100)
A:
PF126982=ABC2_membrane_3=FE(12.8=100)
C2:
PF126982=ABC2_membrane_3=FE(7.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTGTAGTATTGGCTATGTCTCA
R:
AGCAGTGCCAGGTATACAATTTCA
Band lengths:
178-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)