MmuEX6090854 @ mm10
Exon Skipping
Gene
ENSMUSG00000041797 | Abca9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:MGI Symbol;Acc:MGI:2386796]
Coordinates
chr11:110118081-110127474:-
Coord C1 exon
chr11:110127361-110127474
Coord A exon
chr11:110120664-110120783
Coord C2 exon
chr11:110118081-110118149
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTGCTATGCTCCCATTGCAGGTC
3' ss Score
10.27
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATCCCATGTAGTATTGGCTATGCATCATCTCTCATATTCATGACTTATGTGATTTCATTCATTTTTCGTAATGGCAGAAAAAATAGTGGCATCTGGTCATTTTTCTTCCTAATT
Seq A exon
GTCACCATCTTCTTTATCATTGCTACTGACATAAATGAATACGGCTTTCTAGAGCTGCTAATCTGCACCTTTTTAGTCCCTCCTTTCACACTGATTGGCTCACTATTGATTTTTTCTGAG
Seq C2 exon
GTTTCCTATGACTCTGTGGATTACTTGGGAACGTCAGAATCTCAACTCGTATTTCTGGCATTGCTGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041797-'32-33,'32-32,33-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.3=100)
A:
PF126982=ABC2_membrane_3=FE(13.0=100)
C2:
PF126982=ABC2_membrane_3=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCATGTAGTATTGGCTATGCA
R:
TCAGCAATGCCAGAAATACGAGT
Band lengths:
180-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types