RnoEX6050312 @ rn6
Exon Skipping
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98427912-98431303:-
Coord C1 exon
chr10:98431190-98431303
Coord A exon
chr10:98429895-98430014
Coord C2 exon
chr10:98427912-98427980
Length
120 bp
Sequences
Splice sites
3' ss Seq
GGGCTGTGCTCTCATTGCAGGTC
3' ss Score
9.88
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATACCGTGCAGTATTGGATATGCGTCATCGCTCATATTCTTGACATATGTGATTTCATTCGTTTTTCGTAATGGCAGAAAAAATAGTGGCATCTGGTCATTTTTCTTCCTAATT
Seq A exon
GTCACCATCTTCTTCATAGTTGCTACCGACATAAATGAGTATGGCTTTCTACAGCTGCTCTTCTGTACCCTTTTAATACCTCCCTTCACACTGATTGGCTCTCTATTAATTTTTTCTGAG
Seq C2 exon
GTCTCTTACGACTCCGTGGATTACTTAGGATCATCAGAATCTCAACTTGTATTTCTGGCATTGCTGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326-'30-32,'30-31,31-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.0=100)
A:
PF126982=ABC2_membrane_3=FE(12.6=100)
C2:
PF126982=ABC2_membrane_3=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGCAGTATTGGATATGCGT
R:
TCAGCAATGCCAGAAATACAAGT
Band lengths:
178-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]