HsaEX6024469 @ hg19
Exon Skipping
Gene
ENSG00000154263 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:30]
Coordinates
chr17:67210845-67212499:-
Coord C1 exon
chr17:67212358-67212499
Coord A exon
chr17:67211956-67212141
Coord C2 exon
chr17:67210845-67210992
Length
186 bp
Sequences
Splice sites
3' ss Seq
AGACCTCTTTCTTCCTTCAGATA
3' ss Score
10.13
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCTCTCCTGGGGATTGACATACATTTGCTTCATCTTCATTATGTCCATTTTTATGGCTCTGGTCATAACATCAATCCCAATTGTATTTCATACTGGCTTCATGGTGATATTCACACTCTATAGCTTATATGGCCTTTCTTTG
Seq A exon
ATAGCATTGGCTTTCCTCATGAGTGTTTTAATAAGGAAACCTATGCTCGCTGGTTTGGCTGGATTTCTCTTCACTGTATTTTGGGGATGTCTGGGATTCACTGTGTTATATAGACAACTTCCTTTATCTTTGGGATGGGTATTAAGTCTTCTTAGCCCTTTTGCCTTCACTGCTGGAATGGCCCAG
Seq C2 exon
ATTACACACCTGGATAATTACTTAAGTGGTGTTATTTTTCCTGATCCCTCTGGGGATTCATACAAAATGATAGCCACTTTTTTCATTTTGGCATTTGATACTCTTTTCTATTTGATATTCACATTATATTTTGAGCGAGTTTTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263-'9-16,'9-14,10-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(14.6=100)
A:
PF126982=ABC2_membrane_3=FE(18.9=100)
C2:
PF126982=ABC2_membrane_3=PD(13.0=84.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCCTGGGGATTGACATAC
R:
GAAAAGAGTATCAAATGCCAAAATGA
Band lengths:
250-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)