BtaEX6091127 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61965945-61967997:+
Coord C1 exon
chr19:61965945-61966086
Coord A exon
chr19:61966576-61966761
Coord C2 exon
chr19:61967850-61967997
Length
186 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCTTTCTTCCTTCAGATA
3' ss Score
12.57
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCTCTCCTGGGCATTGATGTATGCTGGCTTCGTCTTTGTTGTGTCCATTTTCATGACTCTGGTCATAAAATTATTCCAAATGGTTATCCTTACTGGCTTCGTGGTGCTGGTCTCGCTTTTCACCCTGTACGGCCTGTCTTTG
Seq A exon
ATAGCACTGGCTTTCCTCCTCTGCGTGCTGATAAAGAGGCCCATCCTGACTGGCGTGGTTGGCTCTCTCTTCACTGTGTTTTGGGGCTGTCTGGGCTTCACTGCGTTGTACAGACAGCTCCCGTCGTCACTGGGATGGGCTTTATGTCTGTTTAGCCCTTTTGCCTTCACTGCTGGGGTGGCTCAG
Seq C2 exon
ATTTCGCATCAAGAGTATCACGTGAGTGGTGTTGTATTCCCTGATCCCTCTGGGGAGTCATACACAATGATAGTGCTCTTCTTCCTTCTGGCATTTGACACTCTGCTCTATTTGACATTAACATTATATTTTGAGCACATTTTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.1=100)
A:
PF126982=ABC2_membrane_3=FE(15.8=100)
C2:
PF126982=ABC2_membrane_3=PD(10.9=84.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCCTGGGCATTGATGTA
R:
AGCAGAGTGTCAAATGCCAGA
Band lengths:
249-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]