RnoEX6050297 @ rn6
Exon Skipping
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98458128-98461498:-
Coord C1 exon
chr10:98461357-98461498
Coord A exon
chr10:98460600-98460785
Coord C2 exon
chr10:98458128-98458275
Length
186 bp
Sequences
Splice sites
3' ss Seq
TAATTTTTTTCTCCTTTCAGATA
3' ss Score
11.53
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCTTTCCTGGGGTCTGATGTACGCTGGCTTTATCCTTGTTGTGGCTACTTTGATGTCTCTTATTGTGAAATCCACCCAAGTTGTCGTCTTAACTGGTTTCATGGTGGTGTTCCTCCTGTTTCTCCTTTATGGCCTGTCTTTG
Seq A exon
ATAACTTTATCTTTCCTCATGAGTGTGTTGTTAAAGAAACCATTTCTTACTGGCTTGGCTGTCTTCCTCCTTACCGTCTTCTGGGGAAGCCTGGGATTCACAGCATTGTACAAACATCTTCCTGCTTTTATGGAATGGATATTGTGTTTTCTTAGCCCCTTTGCCTTTATTAATGGAATGGCCCAG
Seq C2 exon
CTTATACATTTGGACTATGATGTGAATTCTAATGTAAATTTGAACTCTCCAAACAACTCGTACCTAATCCTGGCCACCCTCTTCATGTTGGTTTTGGATGCTCTTCTCTATTTGGCACTGGCATTGTATTTTGACAAGATTTTACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.0=100)
A:
PF126982=ABC2_membrane_3=FE(15.6=100)
C2:
PF126982=ABC2_membrane_3=PD(10.7=84.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTGATGTACGCTGGCTTT
R:
TGCCAGTGCCAAATAGAGAAGA
Band lengths:
255-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]