MmuEX6090837 @ mm9
Exon Skipping
Gene
ENSMUSG00000041797 | Abca9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:MGI Symbol;Acc:MGI:2386796]
Coordinates
chr11:110013260-110016610:-
Coord C1 exon
chr11:110016469-110016610
Coord A exon
chr11:110015692-110015877
Coord C2 exon
chr11:110013260-110013407
Length
186 bp
Sequences
Splice sites
3' ss Seq
AATTTTTTTTCTCCTTCCAGATA
3' ss Score
11.21
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCTTTCCTGGAGTCTGATGTATGCTGGCTTTATCCTTGTCGTGGCTGTTTTGATGTCTCTTATTGTGAAATCTGCCCAAGTTGTCGTCTTAACTGGTTTCATGGTGGTGTTCCTTCTGTTTCTCTTTTATGGCCTGTCTTTG
Seq A exon
ATAACTTTATCTTTCCTCATGAGTGTGTTGATAAAGAAACCGTTTCTTACTGGCTTGGCTATCTTCATCCTTACCGTCTTCTGGGGAAGTCTGGGATTCACAGCGTTATACAAACATCTTCCTGCCTTTGTGGAATGGACCTTGTGTTTTCTTAGCCCCTTTGCCTTTACCACTGGAATGGCCCAG
Seq C2 exon
CTTATACATTTGGACTATGATGTGAATTCTAATGTAAATTTGAACTCTCCAAACAACTCGTACCTAATCATGGCCACGCTCTTCATGCTGGTTTTGGATGCTCTTCTCTATTTGGTACTGGCGTTATATTTTGACAAAATTACACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041797-'8-7,'8-6,9-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.0=100)
A:
PF126982=ABC2_membrane_3=FE(15.6=100)
C2:
PF126982=ABC2_membrane_3=PD(10.7=84.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTCTGATGTATGCTGGC
R:
AGAAGAGCATCCAAAACCAGCA
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: