DreEX0009957 @ danRer10
Exon Skipping
Gene
ENSDARG00000074041 | abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:ZFIN;Acc:ZDB-GENE-050517-5]
Coordinates
chr12:38648590-38653077:+
Coord C1 exon
chr12:38648590-38648731
Coord A exon
chr12:38651336-38651524
Coord C2 exon
chr12:38652930-38653077
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCCACTTCTCAATCGTGCAGATT
3' ss Score
8.09
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GCTTTCATGGGGCCTTCTCTATGCCGCCCTAGTGACTACCATGTCCATTCTGATGGCTGTTATTGCGACCTGCACGCCTCTGTTCTCCAACAGCAATTTCTTTGTCATCTTCCTCCTCATTTTCCTCTATGGAATATCCTCG
Seq A exon
ATTTTCTTCTCCTTCATGTTGACCCCGTTGTTTAAGAAGCCCAAGTTTGCCAGTACGGTGGGCTCGATGCTGACGGTGGTGTTTGGCTGTCTGTCGCTCTTTACTGTGTTGATGAGAGATTTCCCTCAGTCTGCTGTGTGGCTCCTCTGCCTTCTGTCCCCCAGCGCTTTTTCTATCGGCATCGCCCAG
Seq C2 exon
GTAGTGTATCTGGAAGCTCAAGGGGATGGCGCAGTGTTCTCATCTCTGGGCAATGGTCCTCACGCTCTCTATGTTCCACTGGTCATGCTGTTTTTGGACTGCATCCTCTACCTGCTTTTAGCCATTTACCTGGACCAAGTGCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074041-'8-10,'8-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.2=100)
A:
PF126982=ABC2_membrane_3=FE(16.1=100)
C2:
PF126982=ABC2_membrane_3=PD(10.9=84.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTATGCCGCCCTAGTGAC
R:
AAGCAGGTAGAGGATGCAGTC
Band lengths:
244-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]