RnoEX0004884 @ rn6
Exon Skipping
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98618527-98621983:-
Coord C1 exon
chr10:98621842-98621983
Coord A exon
chr10:98620590-98620778
Coord C2 exon
chr10:98618527-98618674
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTTACATTTATGCTTTTTAGGTG
3' ss Score
9.66
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCTGTCCTGGGTTCTTCTGTACACGAGTTTGATCTTCCTTATGTCCCTTCTTATGGCCGTCATTGCAACAGCGTCCTCGTTATTCCCTCAGAGTAGCAGCATCGTGATTTTTCTGCTCTTCTTCCTGTACGGATTGTCATCT
Seq A exon
GTGTTTTTTGCTTTAATGTTGACGCCTCTTTTTAAAAAATCAAAGCACGTGGGAGTCGTTGAGTTTTTTGTCACCGTGGTGTTTGGCTTTGTCGGCCTGTTGATAGTCCTCGTAGAAAGTTTCCCCAGGTCGCTAGTGTGGCTCTTCAGTCCTTTGTGTCAGTGCGCCTTTCTGATTGGGATTGCACAG
Seq C2 exon
GTCATGCATTTAGAAGATTTCAATGAAGGAGCCTTATTTTCTAGTTTGACTGAAGGCCCCTACCCGCTAATTATCACCCTTACCATGCTCGCTCTGGACAGTGTGTTCTATGCCCTGCTGGCTGTGTACCTTGATCAGGTCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378-'10-13,'10-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.1=100)
A:
PF126982=ABC2_membrane_3=FE(16.0=100)
C2:
PF126982=ABC2_membrane_3=PD(10.9=84.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGGTTCTTCTGTACACGA
R:
GAACACACTGTCCAGAGCGAG
Band lengths:
246-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]