BtaEX0001697 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002747 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61880429-61884523:+
Coord C1 exon
chr19:61880429-61880570
Coord A exon
chr19:61882414-61882602
Coord C2 exon
chr19:61884376-61884523
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTAACATTTGTATCTTATAGGTG
3' ss Score
10.56
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GCTTTCCTGGGTTCTTCTCTACACAAGTTTGATTTTTCTCATGTCCCTTCTCATGGCAGTCATCGCAACAGCGTCTTCCTTATTCCCTCAGAGTAGCTGCTTTGTGATATTTCTCCTTTTTTTCCTCTATGGCTTATCATCC
Seq A exon
GTGTTTTTTGCTTTAATGCTGACGCCTCTTTTTAAAAAATCAAAGCATGTGGGAATAGTTGAATTTTTAGTCACCGTGGCTTTTGGATTTGTTGGCCTCTTGATAGTCCTCATGGAAAGTTTCCCCCCATCGTTAGTGTGGCTCCTCAGTCCCTTCTGTCAGTGCACTTTCCTGATTGGCATCGCACAG
Seq C2 exon
GTCATGCATTTAGAAGACGTTGATGAAGGTGCTTTAGTTTCTAATTTGACTGAAGGCCCGTGTCCTCTAATCATTGCTATTATGATGCTGATTCTTAACAGCATTTTCTACGCCCTCTTGGCTGTTTATCTTGATCAAGTTGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.1=100)
A:
PF126982=ABC2_membrane_3=FE(16.0=100)
C2:
PF126982=ABC2_membrane_3=PD(10.9=84.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGGTTCTTCTCTACACAAGT
R:
AGAGGGCGTAGAAAATGCTGT
Band lengths:
256-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development