MmuEX0002993 @ mm10
Exon Skipping
Gene
ENSMUSG00000018800 | Abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:MGI Symbol;Acc:MGI:2386607]
Coordinates
chr11:110311311-110314665:-
Coord C1 exon
chr11:110314524-110314665
Coord A exon
chr11:110313329-110313517
Coord C2 exon
chr11:110311311-110311458
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTTACATTTATGCTTTTTAGGTG
3' ss Score
9.66
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCTTTCCTGGGTTCTTCTGTACGCAAGCTTGATTTTCCTTATGTCCCTGCTTATGGCTGTCATCGCAACAGCTTCTTCGTTATTCCCTCAGAGTAGCAGCATTGTGATCTTTCTACTGTTCTTCTTATATGGATTGTCATCT
Seq A exon
GTGTTTTTTGCTTTAATGCTGACGCCTCTTTTTAAAAAATCAAAACACGTGGGAGTCGTTGAGTTTTTTGTCACCGTGGTGTTTGGATTTGTTGGCCTGCTGATTGTCCTCATAGAAAGTTTCCCCAGGTCGCTGGTGTGGCTCTTCAGTCCTTTGTGTCAGTGTGCCTTTCTGATTGGGATTGCACAG
Seq C2 exon
GTCATGCATTTAGAAGATTTTAATGAGGGTGCCTTATTTTCTAATTTGACTGAAGGTCCCTATCCTCTAATTATTACTATTATCATGCTAGCTCTTGACAGTGTGTTCTATGTCCTCCTGGCTGTGTATCTCGACCAAGTCATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018800_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.1=100)
A:
PF126982=ABC2_membrane_3=FE(16.0=100)
C2:
PF126982=ABC2_membrane_3=PD(10.9=84.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTTCTTCTGTACGCAAGC
R:
AGCCAGGAGGACATAGAACACA
Band lengths:
258-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types