GgaEX6016377 @ galGal3
Exon Skipping
Gene
ENSGALG00000004333 | E1BY40_CHICK
Description
NA
Coordinates
chr18:7984275-7985244:-
Coord C1 exon
chr18:7985103-7985244
Coord A exon
chr18:7984724-7984912
Coord C2 exon
chr18:7984275-7984422
Length
189 bp
Sequences
Splice sites
3' ss Seq
TGTTTATTATCCATCCTTAGGTA
3' ss Score
9.76
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCTTTCCTGGGTGCTGCTGTACACCAGCCTGATCTTCGTCATGTCCATCCTGATGGCTGTGATCGCCACGGCCTCCTCTCTCTTTCCCCAGAGCAGTGCCTTCGTGATATTCCTCCTTTTCTTCCTGTATGGCATCTCCTCC
Seq A exon
GTATTCTTTGCCCTGATGCTGACGCCCCTCTTTAAGAAGTCAAAGCACGTGGGTATCGTTGAGTTCCTGGCCACGCTGGCTTTTGGGTTTGTGGGGCTGAACATCGTCCTGCTGGAAGACTTCCCCAAATCCTTCGTGTGGCTCTTCAGCCCTTTGTGCCAATGCAGTTTCCTGATCGGCATCGCGCAG
Seq C2 exon
GTGATGCATTTAGAAGATTATGAAGACGGAGCAACGTTTTCCAATCTAAATCACGGTCCTTACCCACTCTTTATCTCCTTAATTCTACTGGTGCTGGACAGCATATTTTACCTGCTGGCAGCTGTCTACCTCGATCAAGTTATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.1=100)
A:
PF126982=ABC2_membrane_3=FE(15.9=100)
C2:
PF126982=ABC2_membrane_3=PD(10.8=84.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGATCTTCGTCATGTCCA
R:
TGATCGAGGTAGACAGCTGCC
Band lengths:
253-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]