BtaEX6091179 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62111026-62113250:+
Coord C1 exon
chr19:62111026-62111167
Coord A exon
chr19:62111410-62111595
Coord C2 exon
chr19:62113103-62113250
Length
186 bp
Sequences
Splice sites
3' ss Seq
GAGTCTTCCTCTCCTTTCAGATA
3' ss Score
11.09
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCTGTCCTGGGGTTTGATGTACACTGGCTTCATCTCTATCACAGCCACTCTGATGGCTATTATAGTGACATATGCCCCAGTCGTCATCCTGACTGGCTTCACGGTGGTCTTCACCCTCTTTCTCCTCTACGGCCTGTCTTTG
Seq A exon
ATAACGTTAGCTTTCCTGATGAGCGTGTTAGTGAAGAAACCCTTCCTTACGGGGCTGGTGGTCTTCCTCCTCACTGTCTTCTGGGGGAGCCTGGGATTCACAGCTTTGTACAGACGCCTTCCTGCGGCTTTGGAGTGGACCTTATGTCTTCTTAGCCCCTTTGCTTTCACTGCTGGAATGGCCCAG
Seq C2 exon
CTTATCCATTTGGACTACGACGTGAATTCTAACATCCATTCAGATTCTCCAAACGACCAGTACCTCATAATAGCTACTATTTTCATGCTGGTTTTTGATGCTCTTCTCTATTTGGTATTGACGTTGTATTTGGACAAAATTTTGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.0=100)
A:
PF126982=ABC2_membrane_3=FE(15.6=100)
C2:
PF126982=ABC2_membrane_3=PD(10.7=84.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGTTTGATGTACACTGGC
R:
AGAGAAGAGCATCAAAAACCAGCA
Band lengths:
244-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]