GgaEX6016334 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:7957975-7959185:-
Coord C1 exon
chr18:7959172-7959185
Coord A exon
chr18:7958677-7958862
Coord C2 exon
chr18:7957975-7958107
Length
186 bp
Sequences
Splice sites
3' ss Seq
CCTGGTTCTCTCTGCTGCAGATT
3' ss Score
10.65
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
ATGGTATTGCATCG
Seq A exon
ATTCACTTCTGTTTCATGCTCAGCTCCTTGTTAAAGCAGCCTCACATTACCAGTTTTGTGGGATTTTTCCTTCACGTCGTCTTTGGCTCACTGGGCTTCATGACGTTCTTTGAAGAAGTGCCACCATCTTTGGAATGGGTCTTTAACCTCTTCAGTCCTTACACTTTTACAGCTGGCATCTCAAAG
Seq C2 exon
ATTGTAAAATTAGAAAAATATGGACCGACTGTCGCAGCAGAGTTGTACCCTTTCTTTAACCTATATGGCATGCTGATCCTGGACAGCATTCTGTATTTGCTGCTGGCCATCTACTTTGATAAGGTTTTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021391-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF126982=ABC2_membrane_3=PU(58.9=98.2)
C2:
PF126982=ABC2_membrane_3=PD(38.9=82.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]