RnoEX0004990 @ rn6
Exon Skipping
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98364235-98375228:-
Coord C1 exon
chr10:98375087-98375228
Coord A exon
chr10:98374646-98374831
Coord C2 exon
chr10:98364235-98364325
Length
186 bp
Sequences
Splice sites
3' ss Seq
TGGGTCGTCTCTTCTTGTAGATC
3' ss Score
9.42
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCTGTCCTGGGGTTTGCTCTATGGCGTCATTGTCTTCATCGTGACCCTTTTCCTGACATTCGTTGTATATTCCGTCCAATTTGTCTTTATGACTGGATTTATGATGATCTTCAGTCTCTTTTTCTTCTATGGCTTATCTCTG
Seq A exon
ATCTCTTTGTCTTTCTTAATGAGTGTCTTACTAAAGAAGTCTTTCCTCACCGACTTGGTGGTGTTCTTCCTCACTGTTTCCTGCGGAAGTCTTGGATTCGCAGCATTATACAGATACCTTCCTGTGTCCTTGGAGTGGCTTCTAAGTTTGCTAAGCCCTTTCGCTTTTATGCTTGGAATGACCCAG
Seq C2 exon
ATAGGAAAGTGTTCATCTCCCAGGGGAAGCTGAGGTGTGCAGGATCTTCCTTGTTTCTGAAGAAAAAATGGGGGATTGGTTATCACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147_MULTIEX1-7/37=6-15
Average complexity
C3
Mappability confidence:
86%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.1=100)
A:
PF126982=ABC2_membrane_3=FE(15.7=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGGGGTTTGCTCTATGG
R:
AGTGATAACCAATCCCCCATTT
Band lengths:
226-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]