HsaEX6032432 @ hg19
Exon Skipping
Gene
ENSG00000060718 | COL11A1
Description
collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:2186]
Coordinates
chr1:103444416-103444991:-
Coord C1 exon
chr1:103444938-103444991
Coord A exon
chr1:103444616-103444660
Coord C2 exon
chr1:103444416-103444469
Length
45 bp
Sequences
Splice sites
3' ss Seq
AATTGAACTGTCTTTGCTAGGGA
3' ss Score
5.57
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GGTTCCACTGGATTCCCTGGGTTTCCAGGTGCCAATGGAGAGAAAGGTGCACGG
Seq A exon
GGAGTAGCTGGCAAACCAGGCCCTCGGGGTCAGCGTGGTCCAACG
Seq C2 exon
GGTCCTCGAGGTTCAAGAGGTGCAAGAGGTCCCACTGGGAAACCTGGGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000060718-'38-40,'38-39,39-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.858 A=0.981 C2=0.866
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(16.8=100)
A:
PF0139113=Collagen=PD(9.9=66.7)
C2:
PF0139113=Collagen=PU(3.0=11.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCACTGGATTCCCTGGG
R:
CTTTGGCCCAGGTTTCCCAG
Band lengths:
108-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)