RnoEX0022759 @ rn6
Exon Skipping
Gene
ENSRNOG00000023148 | Col11a1
Description
collagen type XI alpha 1 chain [Source:RGD Symbol;Acc:2372]
Coordinates
chr2:216978768-216979151:+
Coord C1 exon
chr2:216978768-216978821
Coord A exon
chr2:216978945-216978989
Coord C2 exon
chr2:216979098-216979151
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTATGAATTGTCTTTGTCAGGGA
3' ss Score
6.64
5' ss Seq
ACGGTGGGT
5' ss Score
8.27
Exon sequences
Seq C1 exon
GGATCCACTGGATTTCCTGGATTTCCAGGTGCCAACGGGGAGAAAGGTGCCCGG
Seq A exon
GGAATTGCTGGCAAACCAGGCCCCCGAGGACAACGTGGTCCAACG
Seq C2 exon
GGTCCTCGAGGTTCCAGAGGCGCCAGAGGTCCCACAGGAAAACCTGGGCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023148-'38-40,'38-39,39-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.541 A=1.000 C2=0.811
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCACTGGATTTCCTGGA
R:
CTTCGGCCCAGGTTTTCC
Band lengths:
108-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]