HsaEX6032449 @ hg38
Exon Skipping
Gene
ENSG00000060718 | COL11A1
Description
collagen type XI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2186]
Coordinates
chr1:102914352-102915684:-
Coord C1 exon
chr1:102915631-102915684
Coord A exon
chr1:102914704-102914811
Coord C2 exon
chr1:102914352-102914405
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTAACATTGTTTAGGGT
3' ss Score
8.2
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GGTGAACCTGGAGAAGCAGGGAACCCAGGGCCTCCTGGGGAAGCAGGTGTAGGC
Seq A exon
GGTCCCAAAGGAGAAAGAGGAGAGAAAGGGGAAGCTGGTCCACCTGGAGCTGCTGGACCTCCAGGTGCCAAGGGGCCACCAGGTGATGATGGCCCTAAGGGTAACCCG
Seq C2 exon
GGTCCTGTTGGTTTTCCTGGAGATCCTGGTCCTCCTGGGGAACCTGGCCCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000060718-'75-77,'75-76,76-77=AN
Average complexity
A_S
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.2=100)
A:
PF0139113=Collagen=FE(41.7=100),PF0139113=Collagen=PU(34.5=55.6)
C2:
PF0139113=Collagen=PD(4.8=22.2),PF0139113=Collagen=FE(29.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAACCTGGAGAAGCAGGG
R:
CAGGGCCAGGTTCCCCAG
Band lengths:
106-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains