GgaEX1016290 @ galGal3
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
NA
Coordinates
chr8:12005990-12006867:+
Coord C1 exon
chr8:12005990-12006043
Coord A exon
chr8:12006518-12006625
Coord C2 exon
chr8:12006814-12006867
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTTCATGTGTTTACTATAGGGT
3' ss Score
9.05
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGTGAACCTGGAGAAGCTGGTAATCCTGGACCTCCTGGAGAATCTGGAACATCT
Seq A exon
GGTCCAAAAGGTGAAAGGGGAGAAAAAGGTGAGGCTGGTCCACCTGGAGCAGCTGGACCACCAGGTGCTAAAGGACCTCCAGGTGATGATGGGCCTAAGGGTAACCCA
Seq C2 exon
GGTCCGGTTGGTTTTCCTGGAGATCCTGGTCCCCCTGGAGAGCCTGGTCCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180-'54-55,'54-54,55-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAACCTGGAGAAGCTGGT
R:
CTGGACCAGGCTCTCCAGG
Band lengths:
106-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]