HsaEX6037139 @ hg19
Exon Skipping
Gene
ENSG00000143776 | CDC42BPA
Description
CDC42 binding protein kinase alpha (DMPK-like) [Source:HGNC Symbol;Acc:1737]
Coordinates
chr1:227192695-227204751:-
Coord C1 exon
chr1:227204628-227204751
Coord A exon
chr1:227203781-227203898
Coord C2 exon
chr1:227192695-227192812
Length
118 bp
Sequences
Splice sites
3' ss Seq
ACAGATGCCTTGTCTTACAGGGA
3' ss Score
7.47
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AAGGGGACGAACTGGTAGTACCTGAAACATCAGATAATAGTCGGAAACAAATGGTTAGAAACATTAACAATAAGCGGCGTTATTCCTTCAGAGTCCCAGAAGAGGAAAGGATGCAGCAGAGGAG
Seq A exon
GGAAATGCTACGAGATCCAGAAATGAGAAATAAATTAATTTCTAATCCAACTAATTTTAATCACATAGCACACATGGGTCCTGGAGATGGAATACAGATCCTGAAAGATCTGCCCATG
Seq C2 exon
AACCCTCGGCCTCAGGAAAGTCGGACAGTATTCAGTGGCTCAGTCAGTATTCCATCTATCACCAAATCCCGCCCTGAGCCAGGCCGCTCCATGAGTGCTAGCAGTGGCTTGTCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143776-'46-51,'46-49,47-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.805 A=0.940 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078623=PBD=WD(100=47.5)
C2:
PF0078623=PBD=PD(16.7=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGACGAACTGGTAGTACCT
R:
CACTGCTAGCACTCATGGAGC
Band lengths:
228-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)