GgaEX6028833 @ galGal3
Exon Skipping
Gene
ENSGALG00000009158 | CDC42BPA
Description
NA
Coordinates
chr3:13327001-13339867:+
Coord C1 exon
chr3:13327001-13327124
Coord A exon
chr3:13327716-13327833
Coord C2 exon
chr3:13339750-13339867
Length
118 bp
Sequences
Splice sites
3' ss Seq
AACAGTATTTTCTCTTCCAGGGA
3' ss Score
9.06
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
AGGGTGATGAACTGGTGGTTCCTGAAACATCAGATAACAGCCGGAAGCAAATGGTTCGAAACATCAACAACAAGCGCCGCTATTCATTCAGAGTACCAGAAGAGGAGAGGATGCAGCAGAGGAG
Seq A exon
GGAGATGCTACGCGATCCAGAAATGAGAAATAAATTAATTTCTAACCCAACTAATTTTAACCACATAGCACATATGGGTCCTGGAGATGGTATACAGATTCTCAAAGACCTTCCAATG
Seq C2 exon
AATCTTCGGCCTCAGGAAAGTCGGACCGTATTCAGTGGCTCTGTCAGTATCCCATCGATCACGAAATCCCGCACAGAACCAGGACGATCGATGAGCGCAAGCAGTGGGTTAGCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158-'38-51,'38-45,39-51=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=0.956 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078623=PBD=WD(100=47.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTGATGAACTGGTGGTT
R:
TTGCTGCTAACCCACTGCTTG
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]