DreEX6046441 @ danRer10
Exon Skipping
Gene
ENSDARG00000016464 | si:ch211-89p3.3
Description
si:ch211-89p3.3 [Source:ZFIN;Acc:ZDB-GENE-041014-372]
Coordinates
chr20:35292221-35295271:+
Coord C1 exon
chr20:35292221-35292344
Coord A exon
chr20:35292578-35292695
Coord C2 exon
chr20:35295154-35295271
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGACTTGTGTGTGTTTGCAGAGA
3' ss Score
9.46
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
AGGGGGATGAACTGGTGGTGCCTGAAGTGTGTGATAACAGCAGAAAGCAGATGGTGCGAAGCATGAGCAACAAGAGACGATTCTCGTTTCGTATTCCTGAGGAGGAGAGACTGCAGCAGAGGAG
Seq A exon
AGAAATGTTGAAAGATCCTGAGAGGAGGAACAAGCTGATCTCAAATCCTACAAATTTTAACCATGTGGCTCATATGGGACCTGGAGATGGCATGCAGATACTCAGAGACCTGCCAATG
Seq C2 exon
AATGTACGTGCTCAGGACAACCGTGCTGGATTCAGCGGCTCCGTCAGCATCCCCTCCATTACAAAAAACAGAGCAGAACCAGGGCGATCCATGAGCGCAAGCAGTGGCCTAGGAATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016464-'39-41,'39-40,40-41=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078623=PBD=WD(100=52.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGGATGAACTGGTGGTG
R:
GCATTCCTAGGCCACTGCTTG
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]